Package: R.filesets 2.15.1
R.filesets: Easy Handling of and Access to Files Organized in Structured Directories
A file set refers to a set of files located in one or more directories on the file system. This package provides classes and methods to locate, setup, subset, navigate and iterate such sets. The API is designed such that these classes can be extended via inheritance to provide a richer API for special file formats. Moreover, a specific name format is defined such that filenames and directories can be considered to have full names which consists of a name followed by comma-separated tags. This adds additional flexibility to identify file sets and individual files. NOTE: This package's API should be considered to be in an beta stage. Its main purpose is currently to support the aroma.* packages, where it is one of the main core components; if you decide to build on top of this package, please contact the author first.
Authors:
R.filesets_2.15.1.tar.gz
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R.filesets.pdf |R.filesets.html✨
R.filesets/json (API)
NEWS
# Install 'R.filesets' in R: |
install.packages('R.filesets', repos = c('https://henrikbengtsson.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/henrikbengtsson/r.filesets/issues
Last updated 8 months agofrom:0a2d371874 (on master). Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 21 2024 |
R-4.5-win | OK | Aug 21 2024 |
R-4.5-linux | OK | Aug 21 2024 |
R-4.4-win | OK | Aug 21 2024 |
R-4.4-mac | OK | Aug 21 2024 |
R-4.3-win | OK | Aug 21 2024 |
R-4.3-mac | OK | Aug 21 2024 |
Exports:[.GenericDataFileSet[.GenericTabularFile[[.GenericDataFileSetanyDuplicated.GenericDataFileSetanyNA.GenericDataFileSetappendappend.defaultappend.GenericDataFileSetappendColumnNamesTranslatorappendColumnNamesTranslator.ColumnNamesInterfaceappendColumnNamesTranslatorBycharacterappendColumnNamesTranslatorBycharacter.ColumnNamesInterfaceappendColumnNamesTranslatorByfunctionappendColumnNamesTranslatorByfunction.ColumnNamesInterfaceappendColumnNamesTranslatorBylistappendColumnNamesTranslatorBylist.ColumnNamesInterfaceappendColumnNamesTranslatorByNULLappendColumnNamesTranslatorByNULL.ColumnNamesInterfaceappendFilesappendFiles.GenericDataFileSetappendFullNamesTranslatorappendFullNamesTranslator.GenericDataFileSetappendFullNamesTranslatorBydata.frameappendFullNamesTranslatorBydata.frame.GenericDataFileSetappendFullNamesTranslatorByfunctionappendFullNamesTranslatorByfunction.GenericDataFileSetappendFullNamesTranslatorBylistappendFullNamesTranslatorBylist.GenericDataFileSetappendFullNamesTranslatorByNULLappendFullNamesTranslatorByNULL.GenericDataFileSetappendFullNamesTranslatorByTabularTextFileappendFullNamesTranslatorByTabularTextFile.GenericDataFileSetappendFullNamesTranslatorByTabularTextFileSetappendFullNamesTranslatorByTabularTextFileSet.GenericDataFileSetappendFullNameTranslatorappendFullNameTranslator.FullNameInterfaceappendFullNameTranslatorBycharacterappendFullNameTranslatorBycharacter.FullNameInterfaceappendFullNameTranslatorBydata.frameappendFullNameTranslatorBydata.frame.FullNameInterfaceappendFullNameTranslatorByfunctionappendFullNameTranslatorByfunction.FullNameInterfaceappendFullNameTranslatorBylistappendFullNameTranslatorBylist.FullNameInterfaceappendFullNameTranslatorByNULLappendFullNameTranslatorByNULL.FullNameInterfaceappendFullNameTranslatorByTabularTextFileappendFullNameTranslatorByTabularTextFile.FullNameInterfaceappendFullNameTranslatorByTabularTextFileSetappendFullNameTranslatorByTabularTextFileSet.FullNameInterfaceas.character.ChecksumFileas.character.GenericDataFileas.character.GenericDataFileSetas.character.GenericDataFileSetListas.character.GenericTabularFileas.character.TabularTextFileas.data.frame.GenericDataFileSetListas.GenericDataFileSetListas.GenericDataFileSetList.GenericDataFileSetListas.list.GenericDataFileSetas.list.GenericDataFileSetListassertDuplicatesassertDuplicates.GenericDataFileSetListbyNamebyName.GenericDataFileSetbyPathbyPath.GenericDataFileSetbyPath.RDataFileSetbyPath.RdsFileSetc.GenericDataFileSetChecksumFileChecksumFileSetclearCacheclearCache.GenericDataFileSetclearColumnNamesTranslatorclearColumnNamesTranslator.ColumnNamesInterfaceclearFullNamesTranslatorclearFullNamesTranslator.GenericDataFileSetclearFullNameTranslatorclearFullNameTranslator.FullNameInterfaceclearListOfColumnNamesTranslatorsclearListOfColumnNamesTranslators.ColumnNamesInterfaceclearListOfFullNameTranslatorsclearListOfFullNameTranslators.FullNameInterfacecloneclone.GenericDataFileclone.GenericDataFileSetclone.GenericDataFileSetListColumnNamesInterfacecompareChecksumcompareChecksum.GenericDataFilecopyTocopyTo.GenericDataFilecopyTo.GenericDataFileSetcreatecreate.ChecksumFiledim.GenericTabularFiledimension.TabularTextFiledropRootPathTagsdropRootPathTags.defaultdropTagsdropTags.defaultdsApplyInPairsdsApplyInPairs.GenericDataFileSetduplicated.GenericDataFileSetequalsequals.GenericDataFileequals.GenericDataFileSetextractextract.GenericDataFileSetextract.GenericDataFileSetListextractMatrixextractMatrix.GenericTabularFileextractMatrix.GenericTabularFileSetfindByNamefindByName.GenericDataFileSetfindDuplicatedfindDuplicated.GenericDataFileSetfromFilefromFile.GenericDataFilefullnamefullname.defaultFullNameInterfaceGenericDataFileGenericDataFileListGenericDataFileSetGenericDataFileSetListGenericTabularFileGenericTabularFileSetgetAsteriskTagsgetAsteriskTags.GenericDataFileSetListgetAttributegetAttribute.GenericDataFilegetAttributesgetAttributes.GenericDataFilegetChecksumgetChecksum.ChecksumFilegetChecksum.GenericDataFilegetChecksum.GenericDataFileSetgetChecksumFilegetChecksumFile.defaultgetChecksumFile.GenericDataFilegetChecksumFileSetgetChecksumFileSet.GenericDataFileSetgetChecksumObjectsgetChecksumObjects.GenericDataFileSetgetColumnNamesgetColumnNames.ColumnNamesInterfacegetColumnNamesTranslatorgetColumnNamesTranslator.ColumnNamesInterfacegetCommentChargetCommentChar.TabularTextFilegetCreatedOngetCreatedOn.GenericDataFilegetDefaultColumnClassesgetDefaultColumnClasses.TabularTextFilegetDefaultColumnClassPatternsgetDefaultColumnClassPatterns.TabularTextFilegetDefaultColumnNamesgetDefaultColumnNames.ColumnNamesInterfacegetDefaultColumnNames.TabularTextFilegetDefaultFullNamegetDefaultFullName.FullNameInterfacegetDefaultFullName.GenericDataFilegetDefaultFullName.GenericDataFileSetgetDefaultFullName.GenericDataFileSetListgetDepthgetDepth.GenericDataFileSetgetExtensiongetExtension.GenericDataFilegetExtensionPatterngetExtensionPattern.GenericDataFilegetFilegetFile.GenericDataFileSetgetFileClassgetFileClass.GenericDataFileSetgetFileListgetFileList.GenericDataFileSetListgetFileListClassgetFileListClass.GenericDataFileSetListgetFilenamegetFilename.GenericDataFilegetFilenameExtensiongetFilenameExtension.GenericDataFilegetFilesgetFiles.GenericDataFileSetgetFileSizegetFileSize.GenericDataFilegetFileSize.GenericDataFileSetgetFileTypegetFileType.GenericDataFilegetFullNamegetFullName.FullNameInterfacegetFullNamesgetFullNames.GenericDataFileSetgetFullNames.GenericDataFileSetListgetFullNameTranslatorgetFullNameTranslator.FullNameInterfacegetHeadergetHeader.TabularTextFilegetLastAccessedOngetLastAccessedOn.GenericDataFilegetLastModifiedOngetLastModifiedOn.GenericDataFilegetListOfColumnNamesTranslatorsgetListOfColumnNamesTranslators.ColumnNamesInterfacegetListOfFullNameTranslatorsgetListOfFullNameTranslators.FullNameInterfacegetMainFilegetMainFile.ChecksumFilegetNamegetName.FullNameInterfacegetNamesgetNames.GenericDataFileSetgetNames.GenericDataFileSetListgetOneFilegetOneFile.GenericDataFileSetgetOutputExtensiongetOutputExtension.GenericDataFilegetPathgetPath.GenericDataFilegetPath.GenericDataFileSetgetPathnamegetPathname.GenericDataFilegetPathnamesgetPathnames.GenericDataFileSetgetReadArgumentsgetReadArguments.TabularTextFilegetSetgetSet.GenericDataFileSetListgetSetsgetSets.GenericDataFileSetListgetSubdirsgetSubdirs.GenericDataFileSetgetTagsgetTags.ArgumentsgetTags.FullNameInterfacegetTags.GenericDataFileSetListgunzipgunzip.GenericDataFilegunzip.GenericDataFileSetgzipgzip.GenericDataFilegzip.GenericDataFileSethasBeenModifiedhasBeenModified.GenericDataFilehasChecksumFilehasChecksumFile.defaulthasColumnHeaderhasColumnHeader.TabularTextFilehasFilehasFile.GenericDataFileSethasTaghasTag.FullNameInterfacehasTagshasTags.FullNameInterfacehead.GenericTabularFileindexOfindexOf.GenericDataFileSetindexOf.GenericDataFileSetListis.na.GenericDataFileis.na.GenericDataFileSetisFileisFile.GenericDataFileisGzippedisGzipped.GenericDataFileisOldisOld.ChecksumFilelength.GenericDataFileSetlength.GenericDataFileSetListlinkTolinkTo.GenericDataFileloadObjectloadObject.RDataFileloadObject.RdsFileloadRDSloadRDS.defaultloadRDS.RdsFileloadToEnv.RDataFilenamename.defaultnames.GenericDataFileSetnbrOfColumnsnbrOfColumns.ColumnNamesInterfacenbrOfColumns.GenericTabularFilenbrOfFilesnbrOfFiles.GenericDataFileSetnbrOfFiles.GenericDataFileSetListnbrOfLinesnbrOfLines.TabularTextFilenbrOfRowsnbrOfRows.GenericTabularFilenbrOfRows.TabularTextFilenbrOfSetsnbrOfSets.GenericDataFileSetListR.filesetsRDataFileRDataFileSetRdsFileRdsFileSetreadChecksumreadChecksum.ChecksumFilereadChecksum.GenericDataFilereadChecksumsreadChecksums.ChecksumFileSetreadColumnNamesreadColumnNames.TabularTextFilereadColumnsreadColumns.GenericTabularFilereadColumns.TabularTextFilereadDataFramereadDataFrame.defaultreadDataFrame.GenericTabularFilereadDataFrame.TabularTextFilereadDataFrame.TabularTextFileSetreadLinesreadLines.defaultreadLines.TabularTextFilereadRawHeaderreadRawHeader.TabularTextFilereadTableHeaderreadTableHeader.defaultrenameTorenameTo.GenericDataFilerenameToUpperCaseExtrenameToUpperCaseExt.GenericDataFilereorder.GenericDataFileSetrep.GenericDataFileSetresetFullNameresetFullName.FullNameInterfaceresetFullNamesresetFullNames.GenericDataFileSetsetAttributesetAttribute.GenericDataFilesetAttributessetAttributes.GenericDataFilesetAttributesBysetAttributesBy.GenericDataFilesetAttributesByTagssetAttributesByTags.GenericDataFilesetColumnNamessetColumnNames.ColumnNamesInterfacesetColumnNamesTranslatorsetColumnNamesTranslator.ColumnNamesInterfacesetCommentCharsetCommentChar.TabularTextFilesetDepthsetDepth.GenericDataFileSetsetExtensionPatternsetExtensionPattern.GenericDataFilesetFullNamesetFullName.FullNameInterfacesetFullNamesTranslatorsetFullNamesTranslator.GenericDataFileSetsetFullNameTranslatorsetFullNameTranslator.FullNameInterfacesetListOfColumnNamesTranslatorssetListOfColumnNamesTranslators.ColumnNamesInterfacesetListOfFullNameTranslatorssetListOfFullNameTranslators.FullNameInterfacesetNamesetName.FullNameInterfacesetTagssetTags.FullNameInterfacesetTags.GenericDataFileSetListsortBysortBy.GenericDataFileSetTabularTextFileTabularTextFileSettagstags.defaulttail.GenericTabularFiletestAttributestestAttributes.GenericDataFiletranslateColumnNamestranslateColumnNames.ColumnNamesInterfacetranslateFullNametranslateFullName.FullNameInterfaceunique.GenericDataFileSetupdate2update2.GenericDataFileSetupdateColumnNamesupdateColumnNames.ColumnNamesInterfaceupdateFullNameupdateFullName.FullNameInterfaceupdateFullName.GenericDataFileSetupdateFullNamesupdateFullNames.GenericDataFileSetvalidatevalidate.ChecksumFilevalidate.ChecksumFileSetvalidate.GenericDataFilevalidate.GenericDataFileSetvalidateChecksumvalidateChecksum.GenericDataFileverifyverify.GenericTabularFileverify.TabularTextFilewriteChecksumwriteChecksum.GenericDataFilewriteColumnsToFileswriteColumnsToFiles.GenericTabularFile
Dependencies:digestR.cacheR.methodsS3R.ooR.utils
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Package R.filesets | R.filesets-package R.filesets |
The ChecksumFile class | ChecksumFile ChecksumFile.getChecksum getChecksum,ChecksumFile-method getChecksum.ChecksumFile |
The ChecksumFileSet class | ChecksumFileSet |
The ColumnNamesInterface class interface | ColumnNamesInterface |
The FullNameInterface class interface | FullNameInterface |
The abstract GenericDataFile class | GenericDataFile |
The GenericDataFileSet class | GenericDataFileSet |
The GenericDataFileSetList class | GenericDataFileSetList |
The abstract GenericTabularFile class | GenericTabularFile |
The GenericTabularFileSet class | GenericTabularFileSet |
Reads data from a RDS file | loadRDS loadRDS.default loadRDS.RdsFile |
Reads data from a RDS file | loadToEnv loadToEnv.RDataFile |
The RDataFile class | loadObject loadObject.RDataFile RDataFile |
The RDataFileSet class | byPath.RDataFileSet RDataFileSet |
The RdsFile class | loadObject.RdsFile RdsFile |
The RdsFileSet class | byPath.RdsFileSet RdsFileSet |
Reads data from a tabular file | readDataFrame readDataFrame.default |
The TabularTextFile class | TabularTextFile |
The TabularTextFileSet class | TabularTextFileSet |