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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TopDom" in publications use:'
type: software
license: GPL-1.0-only
title: 'TopDom: An Efficient and Deterministic Method for Identifying Topological
  Domains in Genomes'
version: 0.10.1
doi: 10.1093/nar/gkv1505
identifiers:
- type: doi
  value: 10.32614/CRAN.package.TopDom
abstract: The 'TopDom' method identifies topological domains in genomes from Hi-C
  sequence data (Shin et al., 2016 <https://doi.org/10.1093/nar/gkv1505>). The authors
  published an implementation of their method as an R script (two different versions;
  also available in this package). This package originates from those original 'TopDom'
  R scripts and provides help pages adopted from the original 'TopDom' PDF documentation.
  It also provides a small number of bug fixes to the original code.
authors:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
- family-names: Shin
  given-names: Hanjun
  email: shanjun@usc.edu
preferred-citation:
  type: article
  title: 'TopDom: an efficient and deterministic method for identifying topological
    domains in genomes'
  authors:
  - family-names: Shin
    given-names: Hanjun
    email: shanjun@usc.edu
  - family-names: Shi
    given-names: Yi
  - family-names: Dai
    given-names: Chao
  - family-names: Tjong
    given-names: Harianto
  - family-names: Gong
    given-names: Ke
  - family-names: Alber
    given-names: Frank
  - family-names: Zhou
    given-names: Xianghong Jasmine
  journal: Nucleic Acids Research
  volume: '44'
  issue: '7'
  year: '2016'
  doi: 10.1093/nar/gkv1505
  url: https://doi.org/10.1093/nar/gkv1505
  start: e70
repository: https://henrikbengtsson.r-universe.dev
repository-code: https://github.com/HenrikBengtsson/TopDom
commit: 5d10e286ddd9f588a4168e019de03531b4304509
url: https://github.com/HenrikBengtsson/TopDom
contact:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
references:
- type: manual
  title: 'R Package TopDom: An Efficient and Deterministic Method for Identifying
    Topological Domains in Genomes'
  authors:
  - family-names: Bengtsson
    given-names: Henrik
  - family-names: Shin
    given-names: Hanjun
  - family-names: Lazaris
    given-names: Harris
  - family-names: Hu
    given-names: Gangqing
  - family-names: Zhou
    given-names: Xianghong
  year: '2020'
  notes: R package version 0.9.1-9000
  url: https://github.com/HenrikBengtsson/TopDom