When using the TopDom method, or this TopDom package, please cite:

Hanjun Shin, Yi Shi, Chao Dai, Harianto Tjong, Ke Gong, Frank Alber, Xianghong Jasmine Zhou; TopDom: an efficient and deterministic method for identifying topological domains in genomes, Nucleic Acids Research, Volume 44, Issue 7, 20 April 2016, Pages e70, 10.1093/nar/gkv1505. PMCID: PMC4838359, PMID: 26704975.

Henrik Bengtsson, Hanjun Shin, Harris Lazaris, Gangqing Hu and Xianghong Zhou (2020). R Package TopDom: An Efficient and Deterministic Method for Identifying Topological Domains in Genomes. R package version 0.9.1-9000. https://github.com/HenrikBengtsson/TopDom

Corresponding BibTeX entries:

  @Article{,
    author = {Hanjun Shin and Yi Shi and Chao Dai and Harianto Tjong
      and Ke Gong and Frank Alber and Xianghong Jasmine Zhou},
    title = {TopDom: an efficient and deterministic method for
      identifying topological domains in genomes},
    journal = {Nucleic Acids Research},
    volume = {44},
    number = {7},
    pages = {e70},
    year = {2016},
    doi = {10.1093/nar/gkv1505},
    url = {https://doi.org/10.1093/nar/gkv1505},
  }

  @Manual{,
    title = {R Package TopDom: An Efficient and Deterministic Method
      for Identifying Topological Domains in Genomes},
    author = {Henrik Bengtsson and Hanjun Shin and Harris Lazaris and
      Gangqing Hu and Xianghong Zhou},
    year = {2020},
    note = {R package version 0.9.1-9000},
    url = {https://github.com/HenrikBengtsson/TopDom},
  }