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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "aroma.affymetrix" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets'
version: 3.2.2
abstract: A cross-platform R framework that facilitates processing of any number of
  Affymetrix microarray samples regardless of computer system. The only parameter
  that limits the number of chips that can be processed is the amount of available
  disk space. The Aroma Framework has successfully been used in studies to process
  tens of thousands of arrays. This package has actively been used since 2006.
authors:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
preferred-citation:
  type: report
  title: 'aroma.affymetrix: A generic framework in R for analyzing small to very large
    Affymetrix data sets in bounded memory'
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: Simpson
    given-names: K.
  - family-names: Bullard
    given-names: J.
  - family-names: Hansen
    given-names: K.
  institution:
    name: Department of Statistics, University of California, Berkeley
  year: '2008'
  month: '2'
  issue: '745'
repository: https://henrikbengtsson.r-universe.dev
repository-code: https://github.com/HenrikBengtsson/aroma.affymetrix
url: https://www.aroma-project.org/
contact:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
references:
- type: article
  title: Estimation and assessment of raw copy numbers at the single locus level
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: Irizarry
    given-names: R.
  - family-names: Carvalho
    given-names: B.
  - family-names: Speed
    given-names: T.P.
  journal: Bioinformatics
  year: '2008'
  volume: '24'
  url: http://dx.doi.org/10.1093/bioinformatics/btn016
  start: '759'
  end: '767'
- type: article
  title: A single-array preprocessing method for estimating full-resolution raw copy
    numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 \& 6
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: Wirapati
    given-names: P.
  - family-names: Speed
    given-names: T.P.
  journal: Bioinformatics
  year: '2009'
  volume: '25'
  url: http://dx.doi.org/10.1093/bioinformatics/btp371
  start: '2149'
  end: '2156'