Please cite PSCBS using one or more of the following references:
A.B. Olshen, H. Bengtsson, P. Neuvial, P.T. Spellman, R.A. Olshen,
V.E. Seshan. Parent-specific copy number in paired tumor-normal
studies using circular binary segmentation, Bioinformatics, 2011
A BibTeX entry for LaTeX users is
@Article{,
author = {Adam B. Olshen and Henrik Bengtsson and Pierre Neuvial and Paul Spellman and Richard A. Olshen and Venkatraman E. Seshan},
title = {Parent-specific copy number in paired tumor-normal studies using circular binary segmentation},
journal = {Bioinformatics},
year = {2011},
volume = {27},
number = {15},
doi = {10.1093/bioinformatics/btr329},
url = {https://doi.org/10.1093/bioinformatics/btr329},
}
Please cite PSCBS using one or more of the following references:
H. Bengtsson, P. Neuvial and T.P. Speed. TumorBoost: Normalization of
allele-specific tumor copy numbers from a single pair of tumor-normal
genotyping microarrays, BMC Bioinformatics, 2010
A BibTeX entry for LaTeX users is
@Article{,
author = {H. Bengtsson and Pierre Neuvial and Terence P Speed},
title = {TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays},
journal = {BMC Bioinformatics},
year = {2010},
month = {May},
volume = {11},
number = {245},
doi = {10.1186/1471-2105-11-245},
url = {https://doi.org/10.1186/1471-2105-11-245},
}
H. Bengtsson, A. Ray, P. Spellman and T.P. Speed. A single-sample
method for normalizing and combining full-resolutioncopy numbers from
multiple platforms, labs and analysis methods, Bioinformatics, 2009
A BibTeX entry for LaTeX users is
@Article{,
author = {Henrik Bengtsson and Amrita Ray and Paul Spellman and Terence P Speed},
title = {A single-sample method for normalizing and combining full-resolutioncopy numbers from multiple platforms, labs and analysis methods},
journal = {Bioinformatics},
year = {2009},
volume = {25},
number = {7},
doi = {10.1093/bioinformatics/btp074},
url = {https://academic.oup.com/bioinformatics/article/25/7/861/210486},
}
H. Bengtsson; K. Simpson; J. Bullard; K. Hansen. aroma.affymetrix: A
generic framework in R for analyzing small to very large Affymetrix
data sets in bounded memory, Tech Report 745, Department of Statistics,
University of California, Berkeley, February 2008
A BibTeX entry for LaTeX users is
@TechReport{,
author = {H. Bengtsson and K. Simpson and J. Bullard and K. Hansen},
title = {{aroma.affymetrix}: A generic framework in {R} for analyzing small to very large {Affymetrix} data sets in bounded memory},
institution = {Department of Statistics, University of California, Berkeley},
year = {2008},
month = {February},
number = {745},
}
H. Bengtsson, R. Irizarry, B. Carvalho, & T.P. Speed. Estimation and
assessment of raw copy numbers at the single locus level,
Bioinformatics, 2008
A BibTeX entry for LaTeX users is
@Article{,
author = {Henrik Bengtsson and R. Irizarry and B. Carvalho and T.P. Speed},
title = {Estimation and assessment of raw copy numbers at the single locus level},
journal = {Bioinformatics},
year = {2008},
volume = {24},
number = {6},
url = {https://academic.oup.com/bioinformatics/article/24/6/759/193223},
}