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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "aroma.light" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'aroma.light: Light-Weight Methods for Normalization and Visualization of Microarray
  Data using Only Basic R Data Types'
version: 3.30.0
doi: 10.1186/1471-2105-11-245
abstract: Methods for microarray analysis that take basic data types such as matrices
  and lists of vectors. These methods can be used standalone, be utilized in other
  packages, or be wrapped up in higher-level classes.
authors:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
preferred-citation:
  type: article
  title: 'TumorBoost: Normalization of allele-specific tumor copy numbers from a single
    pair of tumor-normal genotyping microarrays'
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: Neuvial
    given-names: Pierre
  - family-names: Speed
    given-names: Terence P
  journal: BMC Bioinformatics
  year: '2010'
  month: '5'
  volume: '11'
  issue: '245'
  doi: 10.1186/1471-2105-11-245
  url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-245
repository: https://henrikbengtsson.r-universe.dev
repository-code: https://github.com/HenrikBengtsson/aroma.light
url: https://www.aroma-project.org
contact:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
references:
- type: article
  title: A single-sample method for normalizing and combining full-resolutioncopy
    numbers from multiple platforms, labs and analysis methods
  authors:
  - family-names: Bengtsson
    given-names: Henrik
  - family-names: Ray
    given-names: Amrita
  - family-names: Spellman
    given-names: Paul
  - family-names: Speed
    given-names: Terence P
  journal: Bioinformatics
  year: '2009'
  volume: '25'
  issue: '7'
  doi: 10.1093/bioinformatics/btp074
  url: https://bioinformatics.oxfordjournals.org/cgi/content/full/25/7/861
- type: report
  title: 'aroma.affymetrix: A generic framework in R for analyzing small to very large
    Affymetrix data sets in bounded memory'
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: Simpson
    given-names: K.
  - family-names: Bullard
    given-names: J.
  - family-names: Hansen
    given-names: K.
  institution:
    name: Department of Statistics, University of California, Berkeley
  year: '2008'
  month: '2'
  issue: '745'
- type: article
  title: Estimation and assessment of raw copy numbers at the single locus level
  authors:
  - family-names: Bengtsson
    given-names: Henrik
  - family-names: Irizarry
    given-names: R.
  - family-names: Carvalho
    given-names: B.
  - family-names: Speed
    given-names: T.P.
  journal: Bioinformatics
  year: '2008'
  volume: '24'
  issue: '6'
  url: https://bioinformatics.oxfordjournals.org/cgi/content/full/24/6/759
- type: article
  title: Methodological study of affine transformations of gene expressiondata with
    proposed robust non-parametric multi-dimensional normalization method
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: H"ossjer
    given-names: O.
  journal: BMC Bioinformatics
  year: '2006'
  volume: '7'
  issue: '100'
  doi: 10.1186/1471-2105-7-100
  url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-100
- type: article
  title: Calibration and assessment of channel-specific biases in microarray data
    with extended dynamical range
  authors:
  - family-names: Bengtsson
    given-names: H.
  - family-names: J"onsson
    given-names: G.
  - family-names: Vallon-Christersson
    given-names: J.
  journal: BMC Bioinformatics
  year: '2004'
  volume: '5'
  issue: '177'
  doi: 10.1186/1471-2105-5-177
  url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-177
- type: report
  title: aroma - An R Object-oriented Microarray Analysis environment
  authors:
  - family-names: Bengtsson
    given-names: H.
  institution:
    name: Mathematical Statistics, Centre for Mathematical Sciences, Lund University,
      Sweden
  year: '2004'
  issue: '18'
  url: https://lup.lub.lu.se/search/publication/929031