Please cite aroma.light one or more of approprite reference below
H. Bengtsson, P. Neuvial and T.P. Speed. TumorBoost: Normalization of
allele-specific tumor copy numbers from a single pair of tumor-normal
genotyping microarrays, BMC Bioinformatics, 2010
A BibTeX entry for LaTeX users is
@Article{,
author = {H. Bengtsson and Pierre Neuvial and Terence P Speed},
title = {TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays},
journal = {BMC Bioinformatics},
year = {2010},
month = {May},
volume = {11},
number = {245},
doi = {10.1186/1471-2105-11-245},
url = {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-245},
}
H. Bengtsson, A. Ray, P. Spellman and T.P. Speed. A single-sample
method for normalizing and combining full-resolutioncopy numbers from
multiple platforms, labs and analysis methods, Bioinformatics, 2009
A BibTeX entry for LaTeX users is
@Article{,
author = {Henrik Bengtsson and Amrita Ray and Paul Spellman and Terence P Speed},
title = {A single-sample method for normalizing and combining full-resolutioncopy numbers from multiple platforms, labs and analysis methods},
journal = {Bioinformatics},
year = {2009},
volume = {25},
number = {7},
doi = {10.1093/bioinformatics/btp074},
url = {https://bioinformatics.oxfordjournals.org/cgi/content/full/25/7/861},
}
H. Bengtsson; K. Simpson; J. Bullard; K. Hansen. aroma.affymetrix: A
generic framework in R for analyzing small to very large Affymetrix
data sets in bounded memory, Tech Report 745, Department of
Statistics, University of California, Berkeley, February 2008
A BibTeX entry for LaTeX users is
@TechReport{,
author = {H. Bengtsson and K. Simpson and J. Bullard and K. Hansen},
title = {{aroma.affymetrix}: A generic framework in {R} for analyzing small
to very large {Affymetrix} data sets in bounded memory},
institution = {Department of Statistics, University of California, Berkeley},
year = {2008},
month = {February},
number = {745},
}
H. Bengtsson, R. Irizarry, B. Carvalho, & T.P. Speed. Estimation and
assessment of raw copy numbers at the single locus level,
Bioinformatics, 2008
A BibTeX entry for LaTeX users is
@Article{,
author = {Henrik Bengtsson and R. Irizarry and B. Carvalho and T.P. Speed},
title = {Estimation and assessment of raw copy numbers at the single locus level},
journal = {Bioinformatics},
year = {2008},
volume = {24},
number = {6},
url = {https://bioinformatics.oxfordjournals.org/cgi/content/full/24/6/759},
}
H. Bengtsson & O. Hössjer. Methodological study of affine
transformations of gene expressiondata with proposed robust
non-parametric multi-dimensional normalization method, BMC
Bioinformatics, 2006
A BibTeX entry for LaTeX users is
@Article{,
author = {H. Bengtsson and O. H{"o}ssjer},
title = {Methodological study of affine transformations of gene
expressiondata with proposed robust non-parametric multi-dimensional
normalization method},
journal = {BMC Bioinformatics},
year = {2006},
volume = {7},
number = {100},
doi = {10.1186/1471-2105-7-100},
url = {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-100},
}
H. Bengtsson, G. Jönsson & J. Vallon-Christersson. Calibration and
assessment of channel-specific biases in microarray data with
extended dynamical range, BMC Bioinformatics, 2004
A BibTeX entry for LaTeX users is
@Article{,
author = {H. Bengtsson and G. J"{o}nsson and J. Vallon-Christersson},
title = {Calibration and assessment of channel-specific biases in microarray
data with extended dynamical range},
journal = {BMC Bioinformatics},
year = {2004},
volume = {5},
number = {177},
doi = {10.1186/1471-2105-5-177},
url = {https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-177},
}
H. Bengtsson. aroma - An R Object-oriented Microarray Analysis
environment, Preprint 2004:18, Centre for Mathematical Sciences, Lund
University, 2004
A BibTeX entry for LaTeX users is
@TechReport{,
author = {H. Bengtsson},
title = {{aroma} - {A}n {R} {O}bject-oriented {M}icroarray {A}nalysis environment},
type = {Preprint in Mathematical Sciences},
institution = {Mathematical Statistics, Centre for Mathematical Sciences, Lund University, Sweden},
year = {2004},
number = {18},
url = {https://lup.lub.lu.se/search/publication/929031},
}