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# CITATION file created with {cffr} R package, v0.5.0
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "calmate" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'calmate: Improved Allele-Specific Copy Number of SNP Microarrays for Downstream
  Segmentation'
version: 0.13.0
doi: 10.1093/bioinformatics/bts248
abstract: The CalMaTe method calibrates preprocessed allele-specific copy number estimates
  (ASCNs) from DNA microarrays by controlling for single-nucleotide polymorphism-specific
  allelic crosstalk. The resulting ASCNs are on average more accurate, which increases
  the power of segmentation methods for detecting changes between copy number states
  in tumor studies including copy neutral loss of heterozygosity. CalMaTe applies
  to any ASCNs regardless of preprocessing method and microarray technology, e.g.
  Affymetrix and Illumina.
authors:
- family-names: Ortiz
  given-names: Maria
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com
- family-names: Neuvial
  given-names: Pierre
- family-names: Rubio
  given-names: Angel
preferred-citation:
  type: article
  title: 'CalMaTe: A method and software to improve allele-specific copy number of
    SNP arrays for downstream segmentation'
  authors:
  - name: Ortiz-Estevez
  - name: Maria
  - name: Aramburu
  - name: Ander
  - name: Bengtsson
  - name: Henrik
  - name: Neuvial
  - name: Pierre
  - name: Rubio
  - name: Angel
  journal: Bioinformatics
  year: '2012'
  issue: '13'
  volume: '28'
  publisher:
    name: Oxford University Press
  doi: 10.1093/bioinformatics/bts248
  start: '1793'
  end: '1794'
repository: https://henrikbengtsson.r-universe.dev
repository-code: https://github.com/HenrikBengtsson/calmate
url: https://github.com/HenrikBengtsson/calmate/
contact:
- family-names: Bengtsson
  given-names: Henrik
  email: henrikb@braju.com